Summary
Structures and Sequence Alignment
The best structural homolog that predicted by 2. P was
Q16378
(Proline-rich protein 4) with a FATCAT P-Value: 0.014 and RMSD of 3.17 angstrom. The sequence alignment identity is 23.0%.
Structural alignment shown in left. Query protein P0CAT3 colored as red in alignment, homolog Q16378 colored as blue.
Query protein P0CAT3 is also shown in right top, homolog Q16378 showed in right bottom. They are colored based on secondary structures.
P0CAT3 MAPLQLLH--PWGRRGAWASQHSL-----------LSQEAMGPGEGAE-PTPWGYL-RAE-HWGASPSGAPTLPFAPDECSLTPGS-----PPHPLNKQK 79 Q16378 ML-LVLLSVVLLALSSAQSTDNDVNYEDFTFTIPDVEDSSQRPDQGPQRPPPEGLLPRPPGDSGNQDDGPQQRP--P-----KPGGHHRHPPPPPFQNQQ 92 P0CAT3 HHPPHPSQTQKDLVPRSPQL---EKSRIRLR-RTLRN-----LGGGRGQRGQ 122 Q16378 -RPPRRGHRQLSL-PRFPSVSLQEASSFFQRDRPARHPQEQPLW-------- 134
Go Annotations
1. PB indicates the go terms that are found by both PROST and BLAST.2. P indicates the go terms that are found by only PROST.
3. B indicates the go terms that are only annotated by BLAST.
Source | GO | Description |
---|---|---|
2. P | GO:0001895 | retina homeostasis |
2. P | GO:0005615 | extracellular space |
2. P | GO:0007601 | visual perception |
Homologs
1. PB indicates the homologs that are found by both PROST and BLAST.
2. P indicates homologs that are only found by PROST.
3. B indicates homologs that are only found by BLAST.
Source | Homolog | Description | FATCAT p-val | PROST Evalue | BLAST Evalue |
---|---|---|---|---|---|
1. PB | P0CAT3 | Putative TLX1 neighbor protein | 0 | 3.89e-160 | 4.95e-83 |
2. P | Q16378 | Proline-rich protein 4 | 1.40e-02 | 1.42e-02 | NA |