Summary
Structures and Sequence Alignment
The best structural homolog that predicted by 1. PB was
Q9D7V2
(LysM and putative peptidoglycan-binding domain-containing protein 2) with a FATCAT P-Value: 8.96e-08 and RMSD of 2.62 angstrom. The sequence alignment identity is 88.8%.
Structural alignment shown in left. Query protein Q8IV50 colored as red in alignment, homolog Q9D7V2 colored as blue.
Query protein Q8IV50 is also shown in right top, homolog Q9D7V2 showed in right bottom. They are colored based on secondary structures.
Q8IV50 MADSSPALSLREGGPRAPRPSAPSPPPRSRSGSESEEAELSLSLARTKTRSYGSTASVRAPLGAGVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANK 100 Q9D7V2 MADLSPAPALREGGPRAHRPSAPSPPPRSRSTSEPEEAELSLSLARTKTRSYGSTASVRAPLGARVIERHVEHRVRAGDTLQGIALKYGVTMEQIKRANK 100 Q8IV50 LFTNDCIFLKKTLNIPVISEKPLLFNGLNSIDSPENETADNSFSQEEEPVVAGEDLPPPSPQESDVQPVQPEEVSARDFLQRLDLQIKLSTQAAKKLKEE 200 Q9D7V2 LFTNDCIFLKKTLSIPILSEKPLLFNGLNSIDSPESETVDSSFCQEEEPVVSEEELPPPSPQDPDPKPAQPEEVSARDFLQRLDLQIKLSTQAARKLKEE 200 Q8IV50 SRDEESPYATSLYHS 215 Q9D7V2 SRDEESPYAASLYHS 215
Go Annotations
1. PB indicates the go terms that are found by both PROST and BLAST.2. P indicates the go terms that are found by only PROST.
3. B indicates the go terms that are only annotated by BLAST.
Source | GO | Description |
---|---|---|
1. PB | GO:0007030 | Golgi organization |
1. PB | GO:0005794 | Golgi apparatus |
3. B | GO:0019867 | outer membrane |
3. B | GO:0008152 | metabolic process |
3. B | GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
3. B | GO:0071555 | cell wall organization |
3. B | GO:0004040 | amidase activity |
3. B | GO:0008745 | N-acetylmuramoyl-L-alanine amidase activity |
3. B | GO:0005576 | extracellular region |
3. B | GO:0009253 | peptidoglycan catabolic process |
3. B | GO:0008234 | cysteine-type peptidase activity |
3. B | GO:0016787 | hydrolase activity |
3. B | GO:0030435 | sporulation resulting in formation of a cellular spore |
3. B | GO:0000917 | division septum assembly |
3. B | GO:0008932 | lytic endotransglycosylase activity |
3. B | GO:0016798 | hydrolase activity, acting on glycosyl bonds |
3. B | GO:0003796 | lysozyme activity |
3. B | GO:0051117 | ATPase binding |
3. B | GO:0019835 | cytolysis |
3. B | GO:0042742 | defense response to bacterium |
3. B | GO:0030420 | establishment of competence for transformation |
3. B | GO:0016021 | integral component of membrane |
3. B | GO:0009254 | peptidoglycan turnover |
3. B | GO:0043595 | endospore cortex |
3. B | GO:0005654 | nucleoplasm |
3. B | GO:0061784 | peptidoglycan N-acetylglucosaminidase activity |
Homologs
1. PB indicates the homologs that are found by both PROST and BLAST.
2. P indicates homologs that are only found by PROST.
3. B indicates homologs that are only found by BLAST.
Source | Homolog | Description | FATCAT p-val | PROST Evalue | BLAST Evalue |
---|---|---|---|---|---|
1. PB | Q6DEF4 | LysM and putative peptidoglycan-binding domain-containing protein 2 | 2.29e-06 | 8.06e-53 | 2.17e-61 |
1. PB | Q1JQA8 | LysM and putative peptidoglycan-binding domain-containing protein 2 | 1.05e-07 | 5.46e-81 | 3.74e-123 |
1. PB | Q9N012 | LysM and putative peptidoglycan-binding domain-containing protein 1 | 3.44e-04 | 1.07e-02 | 4.17e-30 |
1. PB | Q28DG6 | LysM and putative peptidoglycan-binding domain-containing protein 3 | 1.66e-03 | 3.83e-02 | 0.002 |
1. PB | Q8IV50 | LysM and putative peptidoglycan-binding domain-containing protein 2 | 0 | 7.31e-140 | 1.57e-155 |
1. PB | Q3B7I8 | LysM and putative peptidoglycan-binding domain-containing protein 2 | 1.60e-05 | 1.89e-44 | 4.30e-75 |
1. PB | Q3KPL3 | LysM and putative peptidoglycan-binding domain-containing protein 2 | 6.58e-05 | 7.47e-41 | 2.06e-69 |
1. PB | Q96S90 | LysM and putative peptidoglycan-binding domain-containing protein 1 | 2.45e-03 | 1.12e-03 | 6.86e-31 |
1. PB | Q6P606 | LysM and putative peptidoglycan-binding domain-containing protein 4 | 8.10e-03 | 3.38e-02 | 4.60e-04 |
1. PB | Q5PQ30 | LysM and putative peptidoglycan-binding domain-containing protein 1 | 7.75e-04 | 1.49e-04 | 5.74e-28 |
1. PB | Q9D7V2 | LysM and putative peptidoglycan-binding domain-containing protein 2 | 8.96e-08 | 1.44e-100 | 5.34e-109 |
2. P | P0CY38 | Uncharacterized protein AN12072 | 1.41e-01 | 7.23e-03 | NA |
3. B | Q7A5Y8 | Probable cell wall hydrolase LytN | 3.36e-01 | NA | 0.026 |
3. B | Q5HGI5 | Probable cell wall hydrolase LytN | 5.85e-02 | NA | 0.030 |
3. B | A2RHZ5 | Probable N-acetylmuramidase | 3.79e-01 | NA | 0.030 |
3. B | P0C2T5 | Probable N-acetylmuramidase | 1.00e-01 | NA | 0.030 |
3. B | Q6DCC7 | LysM and putative peptidoglycan-binding domain-containing protein 4 | 6.07e-03 | NA | 0.002 |
3. B | Q99LE3 | LysM and putative peptidoglycan-binding domain-containing protein 3 | 4.12e-03 | NA | 0.002 |
3. B | O32062 | SpoIVD-associated factor A | 1.55e-01 | NA | 0.032 |
3. B | P37710 | Autolysin | 6.54e-01 | NA | 0.018 |
3. B | Q6G9W6 | Probable cell wall hydrolase LytN | 2.72e-02 | NA | 0.028 |
3. B | Q5ZKK0 | LysM and putative peptidoglycan-binding domain-containing protein 3 | 3.94e-03 | NA | 0.007 |
3. B | Q6GHI8 | Probable cell wall hydrolase LytN | 1.47e-01 | NA | 0.026 |
3. B | P39800 | N-acetylmuramoyl-L-alanine amidase XlyA | 2.26e-01 | NA | 0.045 |
3. B | O34669 | Cell wall-binding protein YocH | 1.29e-01 | NA | 0.030 |
3. B | Q9ZNI1 | Probable cell wall hydrolase LytN | 4.40e-02 | NA | 0.029 |
3. B | Q6IQA2 | LysM and putative peptidoglycan-binding domain-containing protein 3 | 8.03e-03 | NA | 3.34e-04 |
3. B | Q7A123 | Probable cell wall hydrolase LytN | 1.07e-01 | NA | 0.028 |
3. B | Q7Z3D4 | LysM and putative peptidoglycan-binding domain-containing protein 3 | 1.59e-02 | NA | 6.76e-04 |
3. B | Q5M836 | LysM and putative peptidoglycan-binding domain-containing protein 3 | 6.70e-03 | NA | 0.002 |
3. B | A0JNI1 | LysM and putative peptidoglycan-binding domain-containing protein 1 | 1.96e-03 | NA | 2.12e-30 |
3. B | Q01838 | Probable endopeptidase p60 | 1.44e-01 | NA | 0.026 |
3. B | Q99UM3 | Probable cell wall hydrolase LytN | 8.33e-02 | NA | 0.026 |
3. B | Q9D0E3 | LysM and putative peptidoglycan-binding domain-containing protein 1 | 4.63e-04 | NA | 1.22e-29 |
3. B | Q9FZ32 | F-box protein At1g55000 | 1.03e-01 | NA | 3.67e-04 |
3. B | Q9CIT4 | Probable N-acetylmuramidase | 9.85e-02 | NA | 0.031 |
3. B | Q5HZA4 | LysM and putative peptidoglycan-binding domain-containing protein 1 | 3.07e-04 | NA | 1.17e-29 |