Summary
Structures and Sequence Alignment
The best structural homolog that predicted by 1. PB was
Q4R6N4
(CPX chromosomal region candidate gene 1 protein homolog) with a FATCAT P-Value: 0.00037 and RMSD of 4.46 angstrom. The sequence alignment identity is 77.6%.
Structural alignment shown in left. Query protein Q8N123 colored as red in alignment, homolog Q4R6N4 colored as blue.
Query protein Q8N123 is also shown in right top, homolog Q4R6N4 showed in right bottom. They are colored based on secondary structures.
Q8N123 MSYPTKEGSDTAGNAHKNSENEPPNDCSTDIESPSADPNMIYQVETNPINREPGTATSQEDVVPQAAENSELETEIQKDQREEDLKEELLLLQTPIPRKL 100 Q4R6N4 MSSPTKEGSDTAGNAHKNSENEPSNDCTTDIESPSADPNMIYQVETNSINREPGTATSQEDAVPQAAANTELETEIQKDQREEDIKEEPLLLQIPIPRKL 100 Q8N123 VS--------------------HKPLNDRSRSHSGKVEMKANNFPINHKTRFRLSTSWRVPFINSHEIRSMILHLLCDRYFSQAAGCQNTMWVKRKYIAC 180 Q4R6N4 ISLMSELGRGNYLRILLVKIDQNKPLNDRSKSHSEKAEMKANNCPVNRKIRFRLSTSWRVPFINNHEIRSMILRLLCERYFSQAEECQDTMWVKQNYIAC 200 Q8N123 LYHPNSFTHHERAITFRRPSRVHYYRPLTERMTSGKFCKSTDTKGKCRFRAIVRSVLFVSQIQIESIFNIKGFVDILTYIHTMNVMITNTNNGWKYFCPI 280 Q4R6N4 LYRPNSFTHHERTVIFRRPLRVRYHRPLTERMTSGKFCKSTDMKGKYRFRAIVRSVLFVSHVQLQSLFNRKGFVDILRYNHTRKVMIISTNNGWKYFCPI 300 Q8N123 CGRLFNTYSELRQHSCSSSGN 301 Q4R6N4 CGRLFNTYFELRRHSCRSPGN 321
Go Annotations
1. PB indicates the go terms that are found by both PROST and BLAST.2. P indicates the go terms that are found by only PROST.
3. B indicates the go terms that are only annotated by BLAST.
Source | GO | Description |
---|---|---|
2. P | GO:0005704 | polytene chromosome band |
2. P | GO:0016586 | RSC-type complex |
2. P | GO:0006342 | |
2. P | GO:0006337 | nucleosome disassembly |
2. P | GO:0030154 | cell differentiation |
2. P | GO:0006265 | DNA topological change |
2. P | GO:0008283 | cell population proliferation |
2. P | GO:0006368 | transcription elongation from RNA polymerase II promoter |
2. P | GO:0006338 | chromatin remodeling |
2. P | GO:0006325 | chromatin organization |
2. P | GO:0007283 | spermatogenesis |
2. P | GO:0009737 | response to abscisic acid |
2. P | GO:0031490 | chromatin DNA binding |
2. P | GO:0001940 | male pronucleus |
2. P | GO:0001939 | female pronucleus |
2. P | GO:0048096 | |
2. P | GO:0051131 | chaperone-mediated protein complex assembly |
2. P | GO:0031011 | Ino80 complex |
2. P | GO:0048813 | dendrite morphogenesis |
2. P | GO:0019731 | antibacterial humoral response |
2. P | GO:0016458 | obsolete gene silencing |
2. P | GO:0005634 | nucleus |
2. P | GO:0043044 | |
2. P | GO:0005700 | polytene chromosome |
2. P | GO:1901536 | negative regulation of DNA demethylation |
2. P | GO:0044726 | protection of DNA demethylation of female pronucleus |
2. P | GO:0035064 | methylated histone binding |
2. P | GO:0005703 | polytene chromosome puff |
2. P | GO:2000653 | regulation of genetic imprinting |
2. P | GO:0048366 | leaf development |
2. P | GO:0040016 | embryonic cleavage |
2. P | GO:0031519 | PcG protein complex |
Homologs
1. PB indicates the homologs that are found by both PROST and BLAST.
2. P indicates homologs that are only found by PROST.
3. B indicates homologs that are only found by BLAST.
Source | Homolog | Description | FATCAT p-val | PROST Evalue | BLAST Evalue |
---|---|---|---|---|---|
1. PB | Q3V0P1 | CPX chromosomal region candidate gene 1 protein homolog | 2.23e-03 | 2.52e-18 | 4.15e-60 |
1. PB | Q4R6N4 | CPX chromosomal region candidate gene 1 protein homolog | 3.70e-04 | 2.33e-35 | 0.0 |
1. PB | Q8N123 | CPX chromosomal region candidate gene 1 protein | 0 | 1.26e-160 | 0.0 |
2. P | Q6IMK0 | Developmental pluripotency-associated protein 3 | 4.11e-01 | 7.53e-03 | NA |
2. P | P14663 | Bactericidin B-3 | 6.17e-01 | 1.68e-02 | NA |
2. P | Q5XHX8 | Testicular haploid expressed gene protein | 1.72e-01 | 8.87e-03 | NA |
2. P | Q8ST83 | Polycomb protein PHO | 4.04e-01 | 6.52e-03 | NA |
2. P | A5HEG9 | GRF-interacting factor 10 | 1.04e-01 | 1.04e-02 | NA |
2. P | Q8C5L7 | RNA-binding protein 34 | 3.90e-01 | 4.08e-02 | NA |
2. P | Q8SQW0 | Zinc finger C2H2 protein ECU11_0990 | 8.09e-02 | 2.69e-03 | NA |
2. P | Q8QZY3 | Developmental pluripotency-associated protein 3 | 4.88e-01 | 1.41e-02 | NA |
2. P | Q96B54 | Zinc finger protein 428 | 1.67e-01 | 7.00e-04 | NA |
2. P | Q5JXX7 | Transmembrane protein 31 | 2.19e-01 | 1.47e-02 | NA |
2. P | O14220 | Meiotic expression up-regulated protein 26 | 3.41e-01 | 2.75e-03 | NA |
2. P | Q9P2T0 | Testicular haploid expressed gene protein | 2.96e-01 | 1.43e-02 | NA |
2. P | P38210 | Chromatin structure-remodeling complex protein RSC14 | 2.90e-01 | 2.62e-02 | NA |
2. P | Q9D9I1 | Testis-expressed protein 43 | 5.52e-01 | 1.37e-02 | NA |
2. P | Q8C1M2 | Zinc finger protein 428 | 2.62e-01 | 2.84e-02 | NA |
2. P | Q6AWT8 | Guanine nucleotide-binding protein subunit gamma 3 | 6.18e-01 | 1.58e-02 | NA |