Summary
NP_001032572.1
Homolog: NP_001018183.2.
Wiesman et al.[1]: NCAS0F03520 (S. castellii
Statistics
Total Homologs: 5
Non significant structural homologs: 1
Total Synteny Homologs: 2
Found Synteny Homologs: 1
Synteny Status: Synteny homolog(s) found
Structures and Sequence Alignment
The best structural homolog was
NP_001018183.2
(NP_001018183.2 putative pre-ribosomal protein Loc1 [Schizosaccharomyces pombe]) with a FATCAT [2] P-Value: 3.61e-04 and RMSD of 1.76 angstrom. The sequence alignment identity is 24.6%.
Structural alignment shown in left. Query protein NP_001032572.1 colored as red in alignment, homolog NP_001018183.2 colored as blue.
Query protein NP_001032572.1 is also shown in right top, homolog NP_001018183.2 showed in right bottom. They are colored based on secondary structures.
NP_001032572.1 MSTAFRKIKLIFKKSDSQYPQNY-RAE-I---K---SRNKNTVI-------------TRHDL---L--IAHEM--KQRASL----ER-----SNSIRNLQ 63 NP_001018183.2 ---------MVVKKSK---PKNQIRVEDLDLPKLNTSKNPQTKIQKKGKKKGKIFAETKDDLQNILNQVTYELDDKIKSKLQVAHEREAVFSKQSDRKI- 87 NP_001032572.1 SQGKRRSDSKESRKL--- 78 NP_001018183.2 SNNK--ADKKTGRKNEKK 103
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| NP_986052.1 | NP_986052.1 AFR505Cp [Eremothecium gossypii ATCC 10895] | 2.30e-01 | 3.20 | 4.47e-05 | False | 26.73% |
| NP_001018183.2 | NP_001018183.2 putative pre-ribosomal protein Loc1 [Schizosaccharomyces pombe] | 3.61e-04 | 1.76 | 1.38e-04 | False | 25.42% |
| XP_003674872.1 | XP_003674872.1 hypothetical protein NCAS_0B04150 [Naumovozyma castellii CBS 4309] | 2.19e-02 | 2.81 | 3.41e-04 | False | 22.83% |
| XP_661633.1 | XP_661633.1 predicted protein [Aspergillus nidulans FGSC A4] | 2.18e-02 | 3.24 | 4.52e-04 | False | 17.43% |
| XP_003677189.1 | XP_003677189.1 hypothetical protein NCAS_0F03520 [Naumovozyma castellii CBS 4309] | 1.80e-03 | 1.32 | 9.27e-04 | True | 29.55% |