Summary
NP_001257673.1
Homolog: XP_500148.2.
Wiesman et al.[1]:
Statistics
Total Homologs: 3
Non significant structural homologs: 2
Total Synteny Homologs: 0
Found Synteny Homologs: 0
Synteny Status: No synteny homologs exists
Structures and Sequence Alignment
The best structural homolog was
XP_500148.2
(XP_500148.2 YALI0A17039p [Yarrowia lipolytica CLIB122]) with a FATCAT [2] P-Value: 2.24e-02 and RMSD of 2.32 angstrom. The sequence alignment identity is 22.8%.
Structural alignment shown in left. Query protein NP_001257673.1 colored as red in alignment, homolog XP_500148.2 colored as blue.
Query protein NP_001257673.1 is also shown in right top, homolog XP_500148.2 showed in right bottom. They are colored based on secondary structures.
NP_001257673.1 -------------MEELICTYPY--H-SNLFMF------LFLFFCPS--KRARRGHP-----------KF-LFTLCYKSNHLI--PK-----LLPPS--- 54 XP_500148.2 MLQNYDTFTITTSVVLVLVLYSYERHCSRCYVSRSSAREQSVSKCASLYKRARNAHPEPARYTQTSTMKLRLF-VSVSTMMLLASAKEFWMALLDPRYAL 99 NP_001257673.1 ----LFTKRVMLNPSS-HPP--SPDF--PTGSSASPRVKLRPSTLWAPPL-TVSSDFAASSSSTAPV-TV--TDK-PV-TPAVSKRYQP 128 XP_500148.2 NGGLLETDRDALATSRCHDRLYMDDYRVPTDTAEAPVEQLATKNLVTPQLRRVRPE-------GVPVITIIRTIKDPVETDS------- 174
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| XP_680598.1 | XP_680598.1 hypothetical protein AN7329.2 [Aspergillus nidulans FGSC A4] | 1.47e-01 | 2.78 | 1.16e-06 | False | 16.10% |
| XP_680486.1 | XP_680486.1 hypothetical protein AN7217.2 [Aspergillus nidulans FGSC A4] | 3.60e-01 | 3.08 | 9.49e-04 | False | 17.89% |
| XP_500148.2 | XP_500148.2 YALI0A17039p [Yarrowia lipolytica CLIB122] | 2.24e-02 | 2.32 | 9.79e-04 | False | 22.75% |