Summary
NP_001257681.1
Homolog: NP_001343121.1.
Wiesman et al.[1]:
Statistics
Total Homologs: 5
Non significant structural homologs: 4
Total Synteny Homologs: 0
Found Synteny Homologs: 0
Synteny Status: No synteny homologs exists
Structures and Sequence Alignment
The best structural homolog was
NP_001343121.1
(NP_001343121.1 uncharacterized protein SPAC4H3.17 [Schizosaccharomyces pombe]) with a FATCAT [2] P-Value: 3.34e-05 and RMSD of 3.18 angstrom. The sequence alignment identity is 21.8%.
Structural alignment shown in left. Query protein NP_001257681.1 colored as red in alignment, homolog NP_001343121.1 colored as blue.
Query protein NP_001257681.1 is also shown in right top, homolog NP_001343121.1 showed in right bottom. They are colored based on secondary structures.
NP_001257681.1 M----TFFLKRKISF-FLSGIAQTFLFLP-ILLNRSVIHVVFLTVVLGHR---IPWDSVIRCNNTGTTHSAVSSRTELLLPIGGVINNWKRRAWNGFSIQ 91 NP_001343121.1 MFGVSTFSLKKTLRFLFF------FEFFSHFRVN---CYMIF---DINWRKFMLCW-----CNPNRTTIDNLQSFT-----VHCIHRN--RLFYKSFILQ 76 NP_001257681.1 WIWRYSFVY- 100 NP_001343121.1 FLGRKRIILQ 86
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| NP_593401.1 | NP_593401.1 uncharacterized protein SPAC23H4.05c [Schizosaccharomyces pombe] | 7.98e-01 | 3.77 | 5.48e-05 | False | 17.46% |
| NP_001343121.1 | NP_001343121.1 uncharacterized protein SPAC4H3.17 [Schizosaccharomyces pombe] | 3.34e-05 | 3.18 | 5.95e-04 | False | 21.82% |
| XP_453838.2 | XP_453838.2 uncharacterized protein KLLA0_D17600g [Kluyveromyces lactis] | 1.82e-01 | 2.00 | 9.29e-04 | False | 21.58% |
| XP_453844.2 | XP_453844.2 uncharacterized protein KLLA0_D17732g [Kluyveromyces lactis] | 3.79e-01 | 3.22 | 9.29e-04 | False | 21.58% |
| XP_453850.1 | XP_453850.1 uncharacterized protein KLLA0_D17864g [Kluyveromyces lactis] | 2.17e-01 | 2.94 | 9.29e-04 | False | 21.58% |