Summary
NP_001333725.1
Homolog: XP_658671.1.
Wiesman et al.[1]:
Statistics
Total Homologs: 3
Non significant structural homologs: 2
Total Synteny Homologs: 0
Found Synteny Homologs: 0
Synteny Status: No synteny homologs exists
Structures and Sequence Alignment
The best structural homolog was
XP_658671.1
(XP_658671.1 predicted protein [Aspergillus nidulans FGSC A4]) with a FATCAT [2] P-Value: 3.30e-02 and RMSD of 3.16 angstrom. The sequence alignment identity is 21.9%.
Structural alignment shown in left. Query protein NP_001333725.1 colored as red in alignment, homolog XP_658671.1 colored as blue.
Query protein NP_001333725.1 is also shown in right top, homolog XP_658671.1 showed in right bottom. They are colored based on secondary structures.
NP_001333725.1 MVIIRIT---LSNLLR--EK-G---DLCLELLR-VDKGIY-----PFDTS-----QPIGSMQVLLPHASNYPGSAQFYLFDAATKLGFEQSVNLNYSE-- 78 XP_658671.1 -----MSSKELYNVVRLVPKPGKFNEVA-EAFRTLSK--YVEENEP-KTQIYFALQPQGTEEFVL--VEKYTDSQN--LKEHASTAAFKQ-----FSKAI 82 NP_001333725.1 NHWLNNTP----CQYLYVF--LQQARLE 100 XP_658671.1 GGWLAQAPEIKRAGFVAGFDGRTKAKL- 109
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| NP_985617.1 | NP_985617.1 AFR070Wp [Eremothecium gossypii ATCC 10895] | 2.60e-01 | 4.13 | 7.54e-06 | False | 20.13% |
| XP_658671.1 | XP_658671.1 predicted protein [Aspergillus nidulans FGSC A4] | 3.30e-02 | 3.16 | 1.99e-04 | False | 21.88% |
| Kwal_14928 | Kwal_14928 | 3.35e-01 | 3.52 | 4.05e-04 | False | 21.31% |