Summary
NP_001335814.1
Homolog: NP_596490.1.
Wiesman et al.[1]:
Statistics
Total Homologs: 3
Non significant structural homologs: 1
Total Synteny Homologs: 0
Found Synteny Homologs: 0
Synteny Status: No synteny homologs exists
Structures and Sequence Alignment
The best structural homolog was
NP_596490.1
(NP_596490.1 uncharacterized protein SPBC887.16 [Schizosaccharomyces pombe]) with a FATCAT [2] P-Value: 7.57e-05 and RMSD of 3.61 angstrom. The sequence alignment identity is 21.9%.
Structural alignment shown in left. Query protein NP_001335814.1 colored as red in alignment, homolog NP_596490.1 colored as blue.
Query protein NP_001335814.1 is also shown in right top, homolog NP_596490.1 showed in right bottom. They are colored based on secondary structures.
NP_001335814.1 -------MPHFKRAAVYEEQKRTGKWGQL------VEETKDRIPE-YSNKT---IAKISHLDNGCLW---PEIKVSFSHHLSILQSMCLHFIISILFSKY 80 NP_596490.1 MARTNLQYP-YK--VLWCAQVKVVKTGLINFFAPSIQRQRERVCEGYLHETPLLLMQV--VEREAITLAKTEFKNSFSN---------LHF-----F--- 78 NP_001335814.1 IFVFLFAFLLPSAFPLFI-LHSTLFRKPC---LSII---GFLKTKV 119 NP_596490.1 ---FLF-WLL--NFILFFRIH--LYS--CNFRMSIICEEYY----- 109
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| NP_596490.1 | NP_596490.1 uncharacterized protein SPBC887.16 [Schizosaccharomyces pombe] | 7.57e-05 | 3.61 | 1.20e-07 | False | 22.07% |
| NP_588217.1 | NP_588217.1 protein mug42 [Schizosaccharomyces pombe] | 5.39e-01 | 3.15 | 3.93e-05 | False | 20.41% |
| NP_001343105.1 | NP_001343105.1 uncharacterized protein SPAC9G1.14 [Schizosaccharomyces pombe] | 4.82e-04 | 1.52 | 7.06e-04 | False | 16.03% |