Summary
NP_001335820.1
Homolog: XP_003678165.1.
Wiesman et al.[1]:
Statistics
Total Homologs: 1
Non significant structural homologs: 0
Total Synteny Homologs: 0
Found Synteny Homologs: 0
Synteny Status: No synteny homologs exists
Structures and Sequence Alignment
The best structural homolog was
XP_003678165.1
(XP_003678165.1 hypothetical protein NCAS_0I01550 [Naumovozyma castellii CBS 4309]) with a FATCAT [2] P-Value: 1.44e-02 and RMSD of 2.75 angstrom. The sequence alignment identity is 14.1%.
Structural alignment shown in left. Query protein NP_001335820.1 colored as red in alignment, homolog XP_003678165.1 colored as blue.
Query protein NP_001335820.1 is also shown in right top, homolog XP_003678165.1 showed in right bottom. They are colored based on secondary structures.
NP_001335820.1 MKNRKFSNLLLLRLRILC---FNKKPAFAATSYAFFFRNFSVLIFIM-VPDEKEN--GAAADNSF-SLL---IGRGVVLFLFYCPTAL--KMH-GP-VPA 86 XP_003678165.1 ----------------MCKLSLN-EPQ----------KRRKELTFTTKISSKKWRSWG------FVSLLPRELGVGVHPFT-SAAGSLGSK-HKGSRKP- 64 NP_001335820.1 HWFCDKNIEAIQSDGQIRLLRSGP---FPWSHGTCIRGA------------------------------------------------------------- 122 XP_003678165.1 ---CEK----MSTN---RLVIRGPALSVQWS-GSFV--AVVIVEKLARFFSYDMFFEKFSAAFRDLAFDRHFPMRKCQGLFFQVNELERLRQRHFNRRGE 151 NP_001335820.1 ------------- 122 XP_003678165.1 CGLSSTGGFSRQC 164
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| XP_003678165.1 | XP_003678165.1 hypothetical protein NCAS_0I01550 [Naumovozyma castellii CBS 4309] | 1.44e-02 | 2.75 | 2.28e-04 | False | 14.08% |