Summary
NP_001335826.1
Homolog: XP_500148.2.
Wiesman et al.[1]:
Statistics
Total Homologs: 4
Non significant structural homologs: 3
Total Synteny Homologs: 0
Found Synteny Homologs: 0
Synteny Status: No synteny homologs exists
Structures and Sequence Alignment
The best structural homolog was
XP_500148.2
(XP_500148.2 YALI0A17039p [Yarrowia lipolytica CLIB122]) with a FATCAT [2] P-Value: 3.60e-03 and RMSD of 1.05 angstrom. The sequence alignment identity is 16.3%.
Structural alignment shown in left. Query protein NP_001335826.1 colored as red in alignment, homolog XP_500148.2 colored as blue.
Query protein NP_001335826.1 is also shown in right top, homolog XP_500148.2 showed in right bottom. They are colored based on secondary structures.
NP_001335826.1 --------------------------MKSCVLS-NYVEGLEIIVCG--Y---RNRLLFPFRATQVQAY-FKVF-SFFFFLLLTLGAAAAAK--------P 58 XP_500148.2 MLQNYDTFTITTSVVLVLVLYSYERHCSRCYVSRSSAREQSVSKCASLYKRARNAHPEPARYTQTSTMKLRLFVSVSTMMLL-----ASAKEFWMALLDP 95 NP_001335826.1 T---------SERQVIFGS--ADK--SPGYHWPVEVSAAWNYRELLCKTIGNLV----------GKPC---SRTWR--LLTKKKRAYCCCLFCCSSSYCL 130 XP_500148.2 RYALNGGLLETDRDALATSRCHDRLYMDDYRVPTDTAEA-PVEQLATK---NLVTPQLRRVRPEGVPVITIIRTIKDPVETDS----------------- 174 NP_001335826.1 AGVLCVFCV 139 XP_500148.2 --------- 174
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| XP_504063.1 | XP_504063.1 YALI0E17435p [Yarrowia lipolytica CLIB122] | 6.77e-02 | 2.80 | 3.85e-05 | False | 21.02% |
| XP_502437.1 | XP_502437.1 YALI0D05269p [Yarrowia lipolytica CLIB122] | 1.77e-01 | 3.05 | 4.38e-04 | False | 8.86% |
| XP_680484.1 | XP_680484.1 predicted protein [Aspergillus nidulans FGSC A4] | 5.94e-01 | 3.19 | 6.46e-04 | False | 21.55% |
| XP_500148.2 | XP_500148.2 YALI0A17039p [Yarrowia lipolytica CLIB122] | 3.60e-03 | 1.05 | 7.27e-04 | False | 16.27% |