Summary
NP_010214.2
Homolog: NP_596815.1.
Wiesman et al.[1]: NCAS0A02590 (S. cast) | KLLA0B03212g (K. lac) | AER066W (A. gos) | Kwal_23.4192 (K. wal)
Statistics
Total Homologs: 12
Non significant structural homologs: 9
Total Synteny Homologs: 4
Found Synteny Homologs: 1
Synteny Status: Synteny homolog(s) found
Structures and Sequence Alignment
The best structural homolog was
NP_596815.1
(NP_596815.1 putative mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces pombe]) with a FATCAT [2] P-Value: 2.86e-02 and RMSD of 3.67 angstrom. The sequence alignment identity is 21.2%.
Structural alignment shown in left. Query protein NP_010214.2 colored as red in alignment, homolog NP_596815.1 colored as blue.
Query protein NP_010214.2 is also shown in right top, homolog NP_596815.1 showed in right bottom. They are colored based on secondary structures.
NP_010214.2 MLRTKVFATTVARISGIR---RYIPIRTI--NTVTKKNISKIEKLCEVLEVNPDGYKGKERIPTKE-----LTKLL----YTTSRNMLVRVPMT-GDLST 85 NP_596815.1 ML-TR-HCN---RL-GLQIENKFV-FRSSSWNCV--RRIGKIA--C-----NENKYR-YEMTSTEEDIDSFFSRVFGEKNYISDKSLREQI-VTHKSYKH 82 NP_010214.2 GNTFETRNETLQKLGEQLIHLEINKMLTITFTNFNQFNIMNKNFNYIHNL-DRARVVNMDSISWLIKNSLKIN-QLAHLRIPANLP-KEMGLTS-SSNDF 181 NP_596815.1 G--LKRYNEPFVSVGNAVIDVCL---L-------NHY-LESGNFSTIPSYKD---LVNLRSPARLAEVAKKWNPETA---TQCILPLK--GPNSPSSSSF 161 NP_010214.2 QNLNDWKVILSFIGYLKLLEIKNDNKKFIESIIKTIC-IPLINYHLRKS---------- 229 NP_596815.1 EKI--YSSIVS--G---LVAVVYFQKGGVEAM--NFCKKSIIS-DLTKDFVRPNTVHNQ 210
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| NP_596815.1 | NP_596815.1 putative mitochondrial ribosomal protein subunit L15 [Schizosaccharomyces pombe] | 2.86e-02 | 3.67 | 5.54e-35 | False | 21.37% |
| XP_452977.1 | XP_452977.1 uncharacterized protein KLLA0_C17402g [Kluyveromyces lactis] | 7.25e-02 | 4.15 | 8.13e-32 | False | 24.67% |
| Kwal_2165 | Kwal_2165 | 8.39e-02 | 3.59 | 1.03e-31 | False | 25.09% |
| Kwal_4192 | Kwal_4192 | 4.61e-02 | 3.13 | 9.54e-29 | True | 26.97% |
| XP_003675927.1 | XP_003675927.1 hypothetical protein NCAS_0C05730 [Naumovozyma castellii CBS 4309] | 7.25e-02 | 3.71 | 2.54e-26 | False | 21.60% |
| XP_503637.1 | XP_503637.1 YALI0E06677p [Yarrowia lipolytica CLIB122] | 4.03e-02 | 4.84 | 4.62e-26 | False | 21.18% |
| NP_984074.1 | NP_984074.1 ADL023Wp [Eremothecium gossypii ATCC 10895] | 6.63e-02 | 3.88 | 1.48e-24 | False | 24.73% |
| XP_682063.1 | XP_682063.1 hypothetical protein AN8794.2 [Aspergillus nidulans FGSC A4] | 8.49e-02 | 3.26 | 9.39e-21 | False | 23.84% |
| XP_505093.1 | XP_505093.1 YALI0F06732p [Yarrowia lipolytica CLIB122] | 1.55e-01 | 3.86 | 6.59e-08 | False | 21.19% |
| XP_003674215.1 | XP_003674215.1 hypothetical protein NCAS_0A12770 [Naumovozyma castellii CBS 4309] | 1.79e-01 | 4.10 | 2.22e-06 | False | 20.45% |
| Kwal_8244 | Kwal_8244 | 1.77e-01 | 5.56 | 3.00e-06 | False | 20.73% |
| XP_663012.1 | XP_663012.1 predicted protein [Aspergillus nidulans FGSC A4] | 1.30e-01 | 4.15 | 5.52e-04 | False | 17.65% |