Summary
NP_011398.3
Homolog: XP_003676274.1.
Wiesman et al.[1]:
Statistics
Total Homologs: 9
Non significant structural homologs: 0
Total Synteny Homologs: 3
Found Synteny Homologs: 3
Synteny Status: Synteny homolog(s) found
Structures and Sequence Alignment
The best structural homolog was
XP_003676274.1
(XP_003676274.1 hypothetical protein NCAS_0D03320 [Naumovozyma castellii CBS 4309]) with a FATCAT [2] P-Value: 4.80e-09 and RMSD of 3.34 angstrom. The sequence alignment identity is 22.4%.
Structural alignment shown in left. Query protein NP_011398.3 colored as red in alignment, homolog XP_003676274.1 colored as blue.
Query protein NP_011398.3 is also shown in right top, homolog XP_003676274.1 showed in right bottom. They are colored based on secondary structures.
NP_011398.3 --------MQPISIKDVESDQGKVY-IVN--ALKDL---VCKCLLEFVDIQIESFMYPDD----PKCFTR-IFKGNKIVNEASD---KDSKVRSYPSSLG 78
XP_003676274.1 MLPPQAINMPPFTHTSRTTDCDPLMDIIKTESLQSLNYSISKSILRVVDHLMENLLYPNDFVESPGAVIKELFSSS--VTSLKDIQIRD-KFQQEEAMLS 97
NP_011398.3 VGHSALFPLIYIRQKTNSLRFLN-DPKQ---LPTPLVD--D-MNA-K--FKGIIKVYENLIHLYHSYQTVDCNNMNQQKLLGDLVSRGNFMLDILHGYVT 168
XP_003676274.1 NG-TVLLLLISARKIVQTIRTMSVDPSNYHTIETNLLELRDTLNSIRTLMDGYLKFMKN-----SAY--VG------QEALNDELRQ---CVEYIDEYLS 180
NP_011398.3 -IAS--TIVRDSKDANILIDTVNRFIHDT---ILFHKRIIHNSNAYTEYHVMKRGMQRNQSEETLVELEFRILDVSDVNLDNEFDDFLQHRKTSLKITHR 262
XP_003676274.1 LLATPKTLTPE------LLNKINKRV--TAGEI----RVLSNSNVFKDY-LLFLGEKGNGA---VLSVSA-ALDLEDV--DMTFDEFYEVRQEVLSISTR 261
NP_011398.3 RVI 265
XP_003676274.1 RIF 264
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| Kwal_2414 | Kwal_2414 | 4.06e-02 | 3.37 | 1.71e-06 | False | 18.63% |
| XP_455529.1 | XP_455529.1 uncharacterized protein KLLA0_F09867g [Kluyveromyces lactis] | 7.67e-04 | 3.01 | 2.67e-05 | False | 18.99% |
| Kwal_16521 | Kwal_16521 | 2.85e-03 | 3.29 | 5.54e-05 | False | 23.47% |
| NP_984809.1 | NP_984809.1 AEL052Wp [Eremothecium gossypii ATCC 10895] | 2.49e-04 | 2.33 | 1.61e-04 | False | 18.79% |
| XP_451552.1 | XP_451552.1 uncharacterized protein KLLA0_B00495g [Kluyveromyces lactis] | 1.39e-06 | 3.53 | 1.87e-04 | True | 25.23% |
| XP_003674969.1 | XP_003674969.1 hypothetical protein NCAS_0B05130 [Naumovozyma castellii CBS 4309] | 5.40e-03 | 3.23 | 1.90e-04 | False | 21.05% |
| XP_003676274.1 | XP_003676274.1 hypothetical protein NCAS_0D03320 [Naumovozyma castellii CBS 4309] | 4.80e-09 | 3.34 | 2.29e-04 | True | 22.44% |
| Kwal_1703 | Kwal_1703 | 5.87e-09 | 3.16 | 2.34e-04 | True | 27.08% |
| NP_594428.1 | NP_594428.1 Pot1-associated protein Poz1 [Schizosaccharomyces pombe] | 8.40e-04 | 3.78 | 4.06e-04 | False | 22.01% |