Summary
NP_012902.4
Homolog: XP_003674932.1.
Wiesman et al.[1]:
Statistics
Total Homologs: 4
Non significant structural homologs: 0
Total Synteny Homologs: 4
Found Synteny Homologs: 0
Synteny Status: Existing synteny homologs couldn't found
Structures and Sequence Alignment
The best structural homolog was
XP_003674932.1
(XP_003674932.1 hypothetical protein NCAS_0B04760 [Naumovozyma castellii CBS 4309]) with a FATCAT [2] P-Value: 2.65e-04 and RMSD of 2.40 angstrom. The sequence alignment identity is 22.2%.
Structural alignment shown in left. Query protein NP_012902.4 colored as red in alignment, homolog XP_003674932.1 colored as blue.
Query protein NP_012902.4 is also shown in right top, homolog XP_003674932.1 showed in right bottom. They are colored based on secondary structures.
NP_012902.4 MNKEELLGFLLDDSIDSQKRCVTDQQAYSNWLKNDNDERTAHEESSSQSTIAALNK--K-K---QTEAAQE---DIE---ELLNG-LEGIIGGADPRNLK 87
XP_003674932.1 ---------------------------------------------------MAIKKSSKSKGNVRREVAPEVFQDSQARNQLANAPVE-----AEKSRLR 44
NP_012902.4 --SK---SKRKTKK---GGSK-PREENVNTEKHIVMLEVEDFSDMSTHEDVNGA-SPSPNLDRSKKNEKRRKNAKELSYDELKDKLEVTTRKSRLECKDL 177
XP_003674932.1 RGTKLQVSKEQAKARLYGAKKNPS-KKIN-EK--------DL-DIPT---LNRAIIPGVKIKRGKKG-K-----KFIA-D--NDSL--TL--NRL-IKTI 116
NP_012902.4 KKKVHGLERRNLELEQRLEELKIENQTLIEINNKLLKNTNEDEINKSQRNKEKDR-KRRER--RTARRKDER------KQE--KKQEKKQDNKTSQSFPS 266
XP_003674932.1 GDKYDDLTESKLEKARRLEEIR-------ELKRKEMER-KEDD-KKDKLEEKKDELKKSASAARSLRRKNKRDIARVSREELATDSEKKKKKKV--SFA- 204
NP_012902.4 STDMNGQPIEF 277
XP_003674932.1 ----------- 204
Homologs
| Homolog | Description | FATCAT p-val | FATCAT RMSD | PROST Evalue | Synteny | Sequence Identity |
|---|---|---|---|---|---|---|
| XP_455376.1 | XP_455376.1 uncharacterized protein KLLA0_F06534g [Kluyveromyces lactis] | 5.62e-04 | 3.49 | 1.83e-05 | False | 22.86% |
| XP_452503.1 | XP_452503.1 uncharacterized protein KLLA0_C06842g [Kluyveromyces lactis] | 1.15e-03 | 4.56 | 2.27e-04 | False | 24.45% |
| Kwal_5138 | Kwal_5138 | 3.21e-03 | 2.94 | 7.48e-04 | False | 22.80% |
| XP_003674932.1 | XP_003674932.1 hypothetical protein NCAS_0B04760 [Naumovozyma castellii CBS 4309] | 2.65e-04 | 2.40 | 9.35e-04 | False | 22.19% |